A non-volatile storage subsystem solution is provided for embedded applications. The storage subsystem is preferably designed to communicate with the host system using a signal interface, such as a USB or SATA interface, that uses substantially fewer signal lines than the IDE interface traditionally used for embedded applications. Thus, the amount of board real estate used to carry interface signals in the host system is reduced. To further reduce board real estate, the host system may include a processor that includes an integrated controller (e.g., a USB or SATA controller) corresponding to the host-subsystem signal interface. The storage subsystem may plug into, and lock to, an internal connector on a circuit board of the host system.